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Abstract
The level of resistance to radiation and the developmental and molecular responses can vary between species, and even between developmental stages of one species. For flies (order: Diptera), prior studies concluded that the fungus gnat Bradysia (Sciara) coprophila (sub-order: Nematocera) is more resistant to irradiation-induced mutations that cause visible phenotypes than the fruit fly Drosophila melanogaster (sub-order: Brachycera). Therefore, we characterized the effects of and level of resistance to ionizing radiation on B. coprophila throughout its life cycle. Our data show that B. coprophila embryos are highly sensitive to even low doses of gamma-irradiation, whereas late-stage larvae can tolerate up to 80 Gy (compared to 40 Gy for D. melanogaster) and still retain their ability to develop to adulthood, though with a developmental delay. To survey the genes involved in the early transcriptional response to irradiation of B. coprophila larvae, we compared larval RNA-seq profiles with and without radiation treatment. The up-regulated genes were enriched for DNA damage response genes, including those involved in DNA repair, cell cycle arrest, and apoptosis, whereas the down-regulated genes were enriched for developmental regulators, consistent with the developmental delay of irradiated larvae. Interestingly, members of the PARP and AGO families were highly up-regulated in the B. coprophila radiation response. We compared the transcriptome responses in B. coprophila to the transcriptome responses in D. melanogaster from 3 previous studies: whereas pathway responses are highly conserved, specific gene responses are less so. Our study lays the groundwork for future work on the radiation responses in Diptera.
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Abstract
The diverse cytochrome P450 enzymes of insects play essential physiological roles and also play important roles in the metabolism of environmental chemicals such as insecticides. We manually curated the complement of P450 (CYP) genes, or CYPome, of the black fungus gnat, Bradysia (Sciara) coprophila (Diptera, Sciaroidea), a species with a variable number of chromosomes. This CYPome carries two types of "alien" P450 genes. The first type of alien P450s was found among the 163 CYP genes of the core genome (autosomes and X). They consist of 28 sequences resulting from horizontal gene transfer, with closest sequences not found in insects, but in other arthropods, often Collembola. These genes are not contaminants, because they are expressed genes with introns, found in synteny with regular dipteran genes, also found in B. odoriphaga and B. hygida. Two such "alien" genes are representatives of CYP clans not otherwise found in insects, a CYP53 sequence related to fungal CYP53 genes, and a CYP19-like sequence similar to some collembolan sequences but of unclear origin. The second type of alien P450s are represented by 99 sequences from germline-restricted chromosomes (GRC). While most are P450 pseudogenes, 33 are apparently intact, with half being more closely related to P450s from Cecidomyiidae than from Sciaridae, thus supporting the hypothesis of a cross-family hybridization origin of the GRC.
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Abstract
One key goal of the Hubble Space Telescope Cosmic Assembly Near-Infrared Deep Extragalactic Legacy Survey is to track galaxy evolution back to z approximate to 8. Its two-tiered "wide and deep" strategy bridges significant gaps in existing near-infrared surveys. Here we report on z approximate to 8 galaxy candidates selected as F105W-band dropouts in one of its deep fields, which covers 50.1 arcmin(2) to 4 ks depth in each of three near-infrared bands in the Great Observatories Origins Deep Survey southern field. Two of our candidates have J < 26.2 mag, and are >1 mag brighter than any previously known F105W-dropouts. We derive constraints on the bright end of the rest-frame ultraviolet luminosity function of galaxies at z approximate to 8, and show that the number density of such very bright objects is higher than expected from the previous Schechter luminosity function estimates at this redshift. Another two candidates are securely detected in Spitzer Infrared Array Camera images, which are the first such individual detections at z approximate to 8. Their derived stellar masses are on the order of a few x 10(9) M-circle dot, from which we obtain the first measurement of the high-mass end of the galaxy stellar mass function at z approximate to 8. The high number density of very luminous and very massive galaxies at z approximate to 8, if real, could imply a large stellar-to-halo mass ratio and an efficient conversion of baryons to stars at such an early time.
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Abstract
We combine high-resolution Hubble Space Telescope/WFC3 images with multi- wavelength photometry to track the evolution of structure and activity of massive (M-* > 10(10)M(circle dot)) galaxies at redshifts z = 1.4-3 in two fields of the Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey. We detect compact, star- forming galaxies (cSFGs) whose number densities, masses, sizes, and star formation rates (SFRs) qualify them as likely progenitors of compact, quiescent, massive galaxies (cQGs) at z = 1.5-3. At z greater than or similar to 2, cSFGs present SFR = 100-200M(circle dot) yr(-1), yet their specific star formation rates (sSFR similar to 10(-9) yr(-1)) are typically half that of other massive SFGs at the same epoch, and host X-ray luminous active galactic nuclei (AGNs) 30 times (similar to 30%) more frequently. These properties suggest that cSFGs are formed by gas- rich processes (mergers or disk- instabilities) that induce a compact starburst and feed an AGN, which, in turn, quench the star formation on dynamical timescales (few 10(8) yr). The cSFGs are continuously being formed at z = 2-3 and fade to cQGs down to z similar to 1.5. After this epoch, cSFGs are rare, thereby truncating the formation of new cQGs. Meanwhile, down to z = 1, existing cQGs continue to enlarge to match local QGs in size, while less-gas-rich mergers and other secular mechanisms shepherd (larger) SFGs as later arrivals to the red sequence. In summary, we propose two evolutionary tracks of QG formation: an early (z greater than or similar to 2), formation path of rapidly quenched cSFGs fading into cQGs that later enlarge within the quiescent phase, and a late-arrival (z less than or similar to 2) path in which larger SFGs form extended QGs without passing through a compact state.
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Abstract
We have made a serendipitous discovery of a massive (similar to 5 x 10(11)M(circle dot)) cD galaxy at z = 1.096 in a candidate-rich cluster in the Hubble Ultra Deep Field (HUDF) area of GOODS-South. This brightest cluster galaxy (BCG) is the most distant cD galaxy confirmed to date. Ultra-deep HST/WFC3 images reveal an extended envelope starting from similar to 10 kpc and reaching similar to 70 kpc in radius along the semimajor axis. The spectral energy distributions indicate that both its inner component and outer envelope are composed of an old, passively evolving (specific star formation rate < 10-4 Gyr(-1)) stellar population. The cD galaxy lies on the same mass-size relation as the bulk of quiescent galaxies at similar redshifts. The cD galaxy has a higher stellar mass surface density (similar to M-*/R-50(2)) but a similar velocity dispersion (similar to root M-*/R-50) to those of more massive, nearby cDs. If the cD galaxy is one of the progenitors of today's more massive cDs, its size (R-50) and stellar mass have had to increase on average by factors of 3.4 +/- 1.1 and 3.3 +/- 1.3 over the past similar to 8 Gyr, respectively. Such increases in size and stellar mass without being accompanied by significant increases in velocity dispersion are consistent with evolutionary scenarios driven by both major and minor dissipationless (dry) mergers. If such cD envelopes originate from dry mergers, our discovery of even one example proves that some BCGs entered the dry merger phase at epochs earlier than z = 1. Our data match theoretical models which predict that the continuance of dry mergers at z < 1 can result in structures similar to those of massive cD galaxies seen today. Moreover, our discovery is a surprise given that the extreme depth of the HUDF is essential to reveal such an extended cD envelope at z > 1 and, yet, the HUDF covers only a minuscule region of sky (similar to 3.1 x 10(-8)). Adding that cDs are rare, our serendipitous discovery hints that such cDs may be more common than expected, perhaps even ubiquitous. Images reaching HUDF depths of more area (especially with cluster BCGs at z > 1) are needed to confirm this conjecture.
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Abstract
Projected axis ratio measurements of 880 early-type galaxies at redshifts 1 < z < 2.5 selected from CANDELS are used to reconstruct and model their intrinsic shapes. The sample is selected on the basis of multiple rest-frame colors to reflect low star-formation activity. We demonstrate that these galaxies as an ensemble are dust-poor and transparent and therefore likely have smooth light profiles, similar to visually classified early-type galaxies. Similar to their present-day counterparts, the z > 1 early-type galaxies show a variety of intrinsic shapes; even at a fixed mass, the projected axis ratio distributions cannot be explained by the random projection of a set of galaxies with very similar intrinsic shapes. However, a two-population model for the intrinsic shapes, consisting of a triaxial, fairly round population, combined with a flat (c/a similar to 0.3) oblate population, adequately describes the projected axis ratio distributions of both present-day and z > 1 early-type galaxies. We find that the proportion of oblate versus triaxial galaxies depends both on the galaxies' stellar mass, and-at a given mass-on redshift. For present-day and z < 1 early-type galaxies the oblate fraction strongly depends on galaxy mass. At z > 1, this trend is much weaker over the mass range explored here (10(10) < M*/M-circle dot < 10(11)), because the oblate fraction among massive (M* similar to 10(11) M-circle dot) was much higher in the past: 0.59 +/- 0.10 at z > 1, compared to 0.20 +/- 0.02 at z similar to 0.1. When combined with previous findings that the number density and sizes of early-type galaxies substantially increase over the same redshift range, this can be explained by the gradual emergence of merger-produced elliptical galaxies, at the expense of the destruction of pre-existing disks that were common among their high-redshift progenitors. In contrast, the oblate fraction among low-mass early-type galaxies (log(M*/M-circle dot) < 10.5) increased toward the present, from z = 0 to 0.38 +/- 0.11 at z > 1 to 0.72 +/- 0.06 at z = 0. We speculate that this lower incidence of disks at early cosmic times can be attributed to two factors: low-mass, star-forming progenitors at z > 1 were not settled into stable disks to the same degree as at later cosmic times, and the stripping of gas from star-forming disk galaxies in dense environments is an increasingly important process at lower redshifts.
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Abstract
How nuclear morphology is regulated during development and disease remains poorly understood. In this issue of Developmental Cell, using a pronuclear assembly assay, Xue et al. (2013) demonstrate that Dppa2, a chromatin-bound microtubule regulator, controls both the morphology and function of the pronucleus by fine-tuning microtubule dynamics.
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Abstract
The nuclear lamina (NL) consists of lamin polymers and proteins that bind to the polymers. Disruption of NL proteins such as lamin and emerin leads to developmental defects and human diseases. However, the expression of multiple lamins, including lamin-A/C, lamin-B1, and lamin-B2, in mammals has made it difficult to study the assembly and function of the NL. Consequently, it has been unclear whether different lamins depend on one another for proper NL assembly and which NL functions are shared by all lamins or are specific to one lamin. Using mouse cells deleted of all or different combinations of lamins, we demonstrate that the assembly of each lamin into the NL depends primarily on the lamin concentration present in the nucleus. When expressed at sufficiently high levels, each lamin alone can assemble into an evenly organized NL, which is in turn sufficient to ensure the even distribution of the nuclear pore complexes. By contrast, only lamin-A can ensure the localization of emerin within the NL. Thus, when investigating the role of the NL in development and disease, it is critical to determine the protein levels of relevant lamins and the intricate shared or specific lamin functions in the tissue of interest.
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