The plant kingdom contains a stunning array of complex morphologies easily observed above-ground, but more challenging to visualize below-ground. Understanding the magnitude of diversity in root distribution within the soil, termed root system architecture (RSA), is fundamental in determining how this trait contributes to species adaptation in local environments. Roots are the interface between the soil environment and the shoot system and therefore play a key role in anchorage, resource uptake, and stress resilience. Previously, we presented the GLO-Roots (Growth and Luminescence Observatory for Roots) system to study the RSA of soil-grown Arabidopsis thaliana plants from germination to maturity (Rellan-Alvarez et al., 2015). In this study, we present the automation of GLO-Roots using robotics and the development of image analysis pipelines in order to examine the temporal dynamic regulation of RSA and the broader natural variation of RSA in Arabidopsis, over time. These datasets describe the developmental dynamics of two independent panels of accessions and reveal highly complex and polygenic RSA traits that show significant correlation with climate variables of the accessions' respective origins.

SUMMARY: We developed grenepipe, an all-in-one Snakemake workflow to streamline the data processing from raw high-throughput sequencing data of individuals or populations to genotype variant calls. Our pipeline offers a range of popular software tools within a single configuration file, automatically installs software dependencies, is highly optimized for scalability in cluster environments, and runs with a single command.

Experiments were conducted to investigate the partitioning of Li, Br, Rb, Cs and B between vapor, brine and halite during subcritical and supercritical phase separation in the NaCl-H2O system (388-550 degrees C, 250-350 bars). Results indicate that Li and Br partition preferentially into the low-salinity vapor fluids, while Rb and Cs become more enriched in the coexisting brines. Under more extreme conditions of pressure and temperature in the two-phase region, especially near the vapor-brine-halite boundary, strong salting-out effects imposed on neutral aqueous species enhance significantly partitioning of all trace elements into the low-salinity fluid. Dissolved boron is strongly affected by this and a particularly strong enrichment into vapors is observed, a trend that can be effectively correlated with changes in reduced density. Exclusion of Li, Br, Rb, Cs and B from halite, when precipitated, further increases the solubility of these species in the coexisting Cl-poor fluid. In general, the lack of distortion in the partitioning behavior of trace elements between vapor, brine and/or halite with the transition from subcritical to supercritical conditions in the NaCl-H2O system precludes the need for special reference to the critical point of seawater when interpreting phase relations in submarine hydrothermal systems. The combination of experimentally determined trace element partitioning data with constraints imposed by mineral solubility provides a means to better understand the origin and evolution of hot spring vent fluids. For example, in Brandon hydrothermal system (21 degrees S EPR) supercritical phase separation and subseafloor mixing appear to be the main heat and mass transport mechanisms fueled by a shallow magmatic intrusion, with boron systematics ruling out major contributions from magmatic degassing processes accompanying the near-seafloor volcanism. (c) 2007 Elsevier Ltd. All rights reserved.

Hydrothermal fluids enriched in hydrocarbons of apparent abiotic origin vent from Fe-Ni sulfide bearing chimney structures on the seafloor at slow spreading mid-ocean ridges. Here we show results from a hydrothermal experiment using carbon isotope labeling techniques and mineral analytical data that indicate that pentlandite ((Fe2Ni7)S-8) enhances formation of C-2 and C-3 alkanes, while also contributing to the formation of other more complex hydrocarbons, such as alcohols and carboxylic acids. ToF-SIMS data reveal the existence of isotopically anomalous carbon on the pentlandite surface, and thus, for the first time, provide unambiguous evidence that mineral catalyzed surface reactions play a role in carbon reduction schemes under hydrothermal conditions. We hypothesize that hydroxymethylene (-CHOH) serves as intermediary facilitating formation of more complex organic compounds. The experimental results provide an explanation for organic synthesis in ultramafic-hosted hydrothermal systems on earth, and on other water-enriched planetary bodies as well.

Low temperature vent fluids (<91 degrees C) issuing from the ultramafic-hosted hydrothermal system at Lost City, 30 degrees N Mid-Atlantic Ridge, are enriched in dissolved volatiles (H-2,CH4) while attaining elevated pH values, indicative of the serpentization processes that govern water/rock interactions deep in the oceanic crust. Here, we present a series of theoretical models to evaluate the extent of hydrothermal alteration and assess the effect of cooling on the systematics of pH-controlled B aqueous species. Peridotite-seawater equilibria calculations indicate that the mineral assemblage composed of diopside, brucite and chrysotile likely dictates fluid pH at moderate temperature serpentinization processes (<300 degrees C), by imposing constraints on the aCa(++)/a(2)H(+) ratios and the activity of dissolved SiO2. Based on Sr abundances and the Sr-87/Sr-86 isotope ratios of vent fluids reported from Lost City, estimated water/rock mass ratios (w/r = 2-4) are consistent with published models involving dissolved CO2 and alkane concentrations. Combining the reported delta O-18 values of vent fluids (0.77 parts per thousand) with such w/r mass ratios, allows us to bracket subseafloor reaction temperatures in the vicinity of 250 degrees C. These estimates are in agreement with previous theoretical studies supporting extensive conductive heat loss within the upflow zones. Experimental studies on peridotite-seawater alteration suggest that fluid pH increases during cooling which then rapidly enhances boron removal from solution and incorporation into secondary phases, providing an explanation for the highly depleted dissolved boron concentrations measured in the low temperature but alkaline Lost City vent fluids. Finally, to account for the depleted B-11 composition (delta B-11 similar to 25-30 parts per thousand) of vent fluids relative to seawater, isotopic fractionation between tetrahedrally coordinated aqueous boron species with BO3-bearing mineral sites (e.g. in calcite, brucite) is proposed. (C) 2008 Elsevier Ltd. All rights reserved.