Since the 1919 foundation of the International Association of Volcanology and Chemistry of the Earth's Interior (IAVCEI), the fields of volcano seismology and acoustics have seen dramatic advances in instrumentation and techniques, and have undergone paradigm shifts in the understanding of volcanic seismo-acoustic source processes and internal volcanic structure. Some early twentieth-century volcanological studies gave equal emphasis to barograph (infrasound and acoustic-gravity wave) and seismograph observations, but volcano seismology rapidly outpaced volcano acoustics and became the standard geophysical volcano-monitoring tool. Permanent seismic networks were established on volcanoes (for example) in Japan, the Philippines, Russia, and Hawai'i by the 1950s, and in Alaska by the 1970s. Large eruptions with societal consequences generally catalyzed the implementation of new seismic instrumentation and led to operationalization of research methodologies. Seismic data now form the backbone of most local ground-based volcano monitoring networks worldwide and play a critical role in understanding how volcanoes work. The computer revolution enabled increasingly sophisticated data processing and source modeling, and facilitated the transition to continuous digital waveform recording by about the 1990s. In the 1970s and 1980s, quantitative models emerged for long-period (LP) event and tremor sources in fluid-driven cracks and conduits. Beginning in the 1970s, early models for volcano-tectonic (VT) earthquake swarms invoking crack tip stresses expanded to involve stress transfer into the wall rocks of pressurized dikes. The first deployments of broadband seismic instrumentation and infrasound sensors on volcanoes in the 1990s led to discoveries of new signals and phenomena. Rapid advances in infrasound technology; signal processing, analysis, and inversion; and atmospheric propagation modeling have now established the role of regional (15-250 km) and remote (> 250 km) ground-based acoustic systems in volcano monitoring. Long-term records of volcano-seismic unrest through full eruptive cycles are providing insight into magma transport and eruption processes and increasingly sophisticated forecasts. Laboratory and numerical experiments are elucidating seismo-acoustic source processes in volcanic fluid systems, and are observationally constrained by increasingly dense geophysical field deployments taking advantage of low-power, compact broadband, and nodal technologies. In recent years, the fields of volcano geodesy, seismology, and acoustics (both atmospheric infrasound and ocean hydroacoustics) are increasingly merging. Despite vast progress over the past century, major questions remain regarding source processes, patterns of volcano-seismic unrest, internal volcanic structure, and the relationship between seismic unrest and volcanic processes.

The plant kingdom contains a stunning array of complex morphologies easily observed above-ground, but more challenging to visualize below-ground. Understanding the magnitude of diversity in root distribution within the soil, termed root system architecture (RSA), is fundamental in determining how this trait contributes to species adaptation in local environments. Roots are the interface between the soil environment and the shoot system and therefore play a key role in anchorage, resource uptake, and stress resilience. Previously, we presented the GLO-Roots (Growth and Luminescence Observatory for Roots) system to study the RSA of soil-grown Arabidopsis thaliana plants from germination to maturity (Rellan-Alvarez et al., 2015). In this study, we present the automation of GLO-Roots using robotics and the development of image analysis pipelines in order to examine the temporal dynamic regulation of RSA and the broader natural variation of RSA in Arabidopsis, over time. These datasets describe the developmental dynamics of two independent panels of accessions and reveal highly complex and polygenic RSA traits that show significant correlation with climate variables of the accessions' respective origins.

SUMMARY: We developed grenepipe, an all-in-one Snakemake workflow to streamline the data processing from raw high-throughput sequencing data of individuals or populations to genotype variant calls. Our pipeline offers a range of popular software tools within a single configuration file, automatically installs software dependencies, is highly optimized for scalability in cluster environments, and runs with a single command.

Experiments were conducted to investigate the partitioning of Li, Br, Rb, Cs and B between vapor, brine and halite during subcritical and supercritical phase separation in the NaCl-H2O system (388-550 degrees C, 250-350 bars). Results indicate that Li and Br partition preferentially into the low-salinity vapor fluids, while Rb and Cs become more enriched in the coexisting brines. Under more extreme conditions of pressure and temperature in the two-phase region, especially near the vapor-brine-halite boundary, strong salting-out effects imposed on neutral aqueous species enhance significantly partitioning of all trace elements into the low-salinity fluid. Dissolved boron is strongly affected by this and a particularly strong enrichment into vapors is observed, a trend that can be effectively correlated with changes in reduced density. Exclusion of Li, Br, Rb, Cs and B from halite, when precipitated, further increases the solubility of these species in the coexisting Cl-poor fluid. In general, the lack of distortion in the partitioning behavior of trace elements between vapor, brine and/or halite with the transition from subcritical to supercritical conditions in the NaCl-H2O system precludes the need for special reference to the critical point of seawater when interpreting phase relations in submarine hydrothermal systems. The combination of experimentally determined trace element partitioning data with constraints imposed by mineral solubility provides a means to better understand the origin and evolution of hot spring vent fluids. For example, in Brandon hydrothermal system (21 degrees S EPR) supercritical phase separation and subseafloor mixing appear to be the main heat and mass transport mechanisms fueled by a shallow magmatic intrusion, with boron systematics ruling out major contributions from magmatic degassing processes accompanying the near-seafloor volcanism. (c) 2007 Elsevier Ltd. All rights reserved.

Hydrothermal fluids enriched in hydrocarbons of apparent abiotic origin vent from Fe-Ni sulfide bearing chimney structures on the seafloor at slow spreading mid-ocean ridges. Here we show results from a hydrothermal experiment using carbon isotope labeling techniques and mineral analytical data that indicate that pentlandite ((Fe2Ni7)S-8) enhances formation of C-2 and C-3 alkanes, while also contributing to the formation of other more complex hydrocarbons, such as alcohols and carboxylic acids. ToF-SIMS data reveal the existence of isotopically anomalous carbon on the pentlandite surface, and thus, for the first time, provide unambiguous evidence that mineral catalyzed surface reactions play a role in carbon reduction schemes under hydrothermal conditions. We hypothesize that hydroxymethylene (-CHOH) serves as intermediary facilitating formation of more complex organic compounds. The experimental results provide an explanation for organic synthesis in ultramafic-hosted hydrothermal systems on earth, and on other water-enriched planetary bodies as well.