Protoplanetary disks are often assumed to change slowly and smoothly during planet formation. Here, we investigate the time evolution of isolated disks subject to viscosity and a disk wind. The viscosity is assumed to increase rapidly at around 900 K due to thermal ionization of alkali metals, or thermionic and ion emission from dust, and the onset of magnetorotational instability (MRI). The disks generally undergo large, rapid fluctuations for a wide range of time-averaged mass accretion rates. Fluctuations involve coupled waves in temperature and surface density that move radially in either direction through the inner 1.5 au of the disk. Two types of waves are seen with radial speeds of roughly 50 and 1000 cm s-1, respectively. The pattern of waves repeats with a period of roughly 10,000 yr that depends weakly on the average mass accretion rate. Viscous transport due to MRI is confined to the inner disk. This region is resupplied by mass flux from the outer disk driven by the disk wind. Interior to 1 au, the temperature and surface density can vary by a factor of 2-10 on timescales of years to kiloyears. The stellar mass accretion rate varies by 3 orders of magnitude on a similar timescale. This behavior lasts for at least 1 Myr for initial disks comparable to the minimum-mass solar nebula.

Ethylene plays its essential roles in plant development, growth, and defense responses by controlling the transcriptional reprograming, in which EIN2-C-directed regulation of histone acetylation is the first key -step for chromatin to perceive ethylene signaling. But how the nuclear acetyl coenzyme A (acetyl CoA) is produced to ensure the ethylene -mediated histone acetylation is unknown. Here we report that ethylene triggers the accumulation of the pyruvate dehydrogenase complex (PDC) in the nucleus to synthesize nuclear acetyl CoA to regulate ethylene response. PDC is identified as an EIN2-C nuclear partner, and ethylene triggers its nuclear accumulation. Mutations in PDC lead to an ethylene-hyposensitivity that results from the reduction of histone acetylation and transcription activation. Enzymatically active nuclear PDC synthesize nuclear acetyl CoA for EIN2-C-directed histone acetylation and transcription regulation. These findings uncover a mechanism by which PDC-EIN2 converges the mitochondrial enzyme mediated nuclear acetyl CoA synthesis with epigenetic and transcriptional regulation for plant hormone response.

Animal regeneration involves coordinated responses across cell types throughout the animal body. In endosymbiotic animals, whether and how symbionts react to host injury and how cellular responses are integrated across species remain unexplored. Here, we study the acoel Convolutriloba longifissura, which hosts symbiotic Tetraselmis sp. green algae and can regenerate entire bodies from tissue fragments. We show that animal injury causes a decline in the photosynthetic efficiency of the symbiotic algae, alongside two distinct, sequential waves of transcriptional responses in acoel and algal cells. The initial algal response is characterized by the upregulation of a cohort of photosynthesis-related genes, though photosynthesis is not necessary for regeneration. A conserved animal transcription factor, runt, is induced after injury and required for acoel regeneration. Knockdown of Cl-runt dampens transcriptional responses in both species and further reduces algal photosynthetic efficiency post-injury. Our results suggest that the holobiont functions as an integrated unit of biological organization by coordinating molecular networks across species through the runt-dependent animal regeneration program.

Background In dinoflagellates, a unique and extremely divergent genomic and nuclear organization has evolved. The highly unusual features of dinoflagellate nuclei and genomes include permanently condensed liquid crystalline chromosomes, primarily packaged by proteins other than histones, genes organized in very long unidirectional gene arrays, a general absence of transcriptional regulation, high abundance of the otherwise very rare DNA modification 5-hydroxymethyluracil (5-hmU), and many others. While most of these fascinating properties are originally identified in the 1970s and 1980s, they have not yet been investigated using modern genomic tools. Results In this work, we address some of the outstanding questions regarding dinoflagellate genome organization by mapping the genome-wide distribution of 5-hmU (using both immunoprecipitation-based and basepair-resolution chemical mapping approaches) and of chromatin accessibility in the genome of the Symbiodiniaceae dinoflagellate Breviolum minutum. We find that the 5-hmU modification is preferentially enriched over certain classes of repetitive elements, often coincides with the boundaries between gene arrays, and is generally correlated with decreased chromatin accessibility, the latter otherwise being largely uniform along the genome. We discuss the potential roles of 5-hmU in the functional organization of dinoflagellate genomes and its relationship to the transcriptional landscape of gene arrays. Conclusions Our results provide the first window into the 5-hmU and chromatin accessibility landscapes in dinoflagellates.

Microalgae contribute to about half of global net photosynthesis, which converts sunlight into the chemical energy (ATP and NADPH) used to transform CO2 into biomass. Alternative electron pathways of photosynthesis have been proposed to generate additional ATP that is required to sustain CO2 fixation. However, the relative importance of each alternative pathway remains elusive. Here, we dissect and quantify the contribution of cyclic, pseudo-cyclic and chloroplast-to-mitochondria electron flows for their ability to sustain net photosynthesis in the microalga Chlamydomonas reinhardtii. We show that (i) each alternative pathway can provide sufficient additional energy to sustain high CO2 fixation rates, (ii) the alternative pathways exhibit cross-compensation, and (iii) the activity of at least one of the three alternative pathways is necessary to sustain photosynthesis. We further show that all pathways have very different efficiencies at energizing CO2 fixation, with the chloroplast-mitochondria interaction being the most efficient. Overall, our data lay bioenergetic foundations for biotechnological strategies to improve CO2 capture and fixation.

The thylakoid membrane lipid sulfoquinovosyldiacylglycerol (SQDG) is an anionic molecule that functions in stabilizing the thylakoid membranes and photosystem (PS) supercomplexes. In this study, we characterized the function of GreenCut protein CrLPB1, which encodes UDP-glucose pyrophosphorylase (UGP3), an enzyme involved in SQDG biosynthesis. The lpb1 mutants had reduced levels of SQDG, grew more slowly than wild type cells or the complemented strain under photoautotrophic conditions and were impacted in its rate of oxygen evolution and photosystem II (PSII) activity, especially electron transfer from Q(A)(-) to Q(B). Furthermore, the structure of the PSII supercomplex and morphology of the thylakoid membranes were also both altered in lpb1. In conclusion, LPB1 is involved in SQDG biosynthesis, which in turn appears to be critical in maintaining normal thylakoid membrane structure and PSII activity/stability.

Simple models have been used to describe ecological processes for over a century. However, the complexity of ecological systems makes simple models subject to modelling bias due to simplifying assumptions or unaccounted factors, limiting their predictive power. Neural ordinary differential equations (NODEs) have surged as a machine-learning algorithm that preserves the dynamic nature of the data (Chen et al. 2018 Adv. Neural Inf. Process. Syst.). Although preserving the dynamics in the data is an advantage, the question of how NODEs perform as a forecasting tool of ecological communities is unanswered. Here, we explore this question using simulated time series of competing species in a time-varying environment. We find that NODEs provide more precise forecasts than autoregressive integrated moving average (ARIMA) models. We also find that untuned NODEs have a similar forecasting accuracy to untuned long-short term memory neural networks and both are outperformed in accuracy and precision by empirical dynamical modelling . However, we also find NODEs generally outperform all other methods when evaluating with the interval score, which evaluates precision and accuracy in terms of prediction intervals rather than pointwise accuracy. We also discuss ways to improve the forecasting performance of NODEs. The power of a forecasting tool such as NODEs is that it can provide insights into population dynamics and should thus broaden the approaches to studying time series of ecological communities.

We have conducted a systematic search around the Milky Way (MW) analog NGC 253 (D = 3.5 Mpc), as a part of the Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS)-a Magellan+Megacam survey to identify dwarfs and other substructures in resolved stellar light around MW-mass galaxies outside of the Local Group. In total, NGC 253 has five satellites identified by PISCeS within 100 kpc with an absolute V-band magnitude of M-V < -7. We have additionally obtained deep Hubble Space Telescope imaging of four reported candidates beyond the survey footprint: Do III, Do IV, and dw0036m2828 are confirmed to be satellites of NGC 253, while SculptorSR is found to be a background galaxy. We find no convincing evidence for the presence of a plane of satellites surrounding NGC 253. We construct its satellite luminosity function, which is complete down to M-V less than or similar to -8 out to 100 kpc and M-V less than or similar to -9 out to 300 kpc, and compare it to those calculated for other Local Volume galaxies. Exploring trends in satellite counts and star-forming fractions among satellite systems, we find relationships with host stellar mass, environment, and morphology, pointing to a complex picture of satellite formation, and a successful model has to reproduce all of these trends.

We present the first detailed chemical-abundance analysis of stars from the dwarf-galaxy stellar stream Wukong/LMS-1 covering a wide metallicity range (-3.5 < [Fe/H] less than or similar to -1.3). We find abundance patterns that are effectively indistinguishable from the bulk of Indus and Jhelum, a pair of smaller stellar streams proposed to be dynamically associated with Wukong/LMS-1. We confirmed a carbon-enhanced metal-poor star ([C/Fe] > +0.7 and [Fe/H] similar to -2.9) in Wukong/LMS-1 with strong enhancements in Sr, Y, and Zr, which is peculiar given its solar-level [Ba/Fe]. Wukong/LMS-1 stars have high abundances of alpha elements up to [Fe/H] greater than or similar to -2$, which is expected for relatively massive dwarfs. Towards the high-metallicity end, Wukong/LMS-1 becomes alpha-poor, revealing that it probably experienced fairly standard chemical evolution. We identified a pair of N- and Na-rich stars in Wukong/LMS-1, reminiscent of multiple stellar populations in globular clusters. This indicates that this dwarf galaxy contained at least one globular cluster that was completely disrupted in addition to two intact ones previously known to be associated with Wukong/LMS-1, which is possibly connected to similar evidence found in Indus. From these >= 3 globular clusters, we estimate the total mass of Wukong/LMS-1 to be approximate to 10(10)M(circle dot), representing similar to 1 per cent of the present-day Milky Way. Finally, the [Eu/Mg] ratio in Wukong/LMS-1 continuously increases with metallicity, making this the first example of a dwarf galaxy where the production of r-process elements is clearly dominated by delayed sources, presumably neutron-star mergers.