We report initial results from a large Gemini program to observe z greater than or similar to 5.7 quasars with GNIRS near-IR spectroscopy. Our sample includes 50 quasars with simultaneous similar to 0.85-2.5 mu m spectra covering the rest-frame ultraviolet and major broad emission lines from Ly alpha to Mg II. We present spectral measurements for these quasars and compare with their lower redshift counterparts at z = 1.5-2.3. We find that when quasar luminosity is matched, there are no significant differences between the rest-UV spectra of z greater than or similar to 5.7 quasars and the low-z comparison sample. High-z quasars have similar continuum and emission line properties and occupy the same region in the black hole mass and luminosity space as the comparison sample, accreting at an average Eddington ratio of similar to 0.3. There is no evidence for super-Eddington accretion or hypermassive (> 10(10) M-circle dot) black holes within our sample. We find a mild excess of quasars with weak C IV lines relative to the control sample. Our results, corroborating earlier studies but with better statistics, demonstrate that these high-z quasars are already mature systems of accreting supermassive black holes operating with the same physical mechanisms as those at lower redshifts.

This is the third paper in a series aimed at finding reionization-era quasars with the combination of DESI Legacy imaging Surveys (DELS), the Pan-STARRS1 (PS1) Survey, and near-infrared imaging surveys, such as the UKIRT Hemisphere Survey (UHS), as well as the Wide-field Infrared Survey Explorer (WISE) mid-infrared survey. In this paper, we describe the updated quasar candidate selection procedure, report the discovery of 16 quasars at 6.4 less than or similar to z less than or similar to 6.9 from an area of similar to 13,020 deg(2), and present the quasar luminosity function (QLF) at z similar to 6.7. The measured QLF follows Phi(L-1450) proportional to L-1450(-2.35) in the magnitude range 27.6 < M-1450 < 25.5. We determine the quasar comoving spatial density at < z > - 6.7 and M-1450 < -26.0 to be 0.39 +/- 0.11 Gpc(-3) and find the exponential density evolution parameter to be k = -0.78 +/- 0.18 from z similar to 6 to z similar to 6.7, corresponding to a rapid decline by a factor of similar to 6 per unit redshift toward earlier epochs. This indicates that the rapid decline of quasar spatial density at z > 5 that was found by previous works continues to z > 6, at a rate significantly faster than the average decline rate between z similar to 3 and 5. We measured quasar comoving emissivity at z similar to 6.7, which indicates that high-redshift quasars are highly unlikely to make a significant contribution to hydrogen reionization. The broad absorption line quasar fraction at z greater than or similar to 6.5 is measured to be greater than or similar to 22%. In addition, we also report the discovery of six additional quasars at z similar to 6 in the Appendix.

Acylsugars are a class of plant defense compounds produced across many distantly related families. Members of the horticulturally important morning glory (Convolvulaceae) family produce a diverse sub-class of acylsugars called resin glycosides (RGs), which comprise oligosaccharide cores, hydroxyacyl chain(s), and decorating aliphatic and aromatic acyl chains. While many RG structures are characterized, the extent of structural diversity of this class in different genera and species is not known. In this study, we asked whether there has been lineage-specific diversification of RG structures in different Convolvulaceae species that may suggest diversification of the underlying biosynthetic pathways. Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) was performed from root and leaf extracts of 26 species sampled in a phylogeny-guided manner. LC-MS/MS revealed thousands of peaks with signature RG fragmentation patterns with one species producing over 300 signals, mirroring the diversity in Solanaceae-type acylsugars. A novel RG from Dichondra argentea was characterized using Nuclear Magnetic Resonance spectroscopy, supporting previous observations of RGs with open hydroxyacyl chains instead of closed macrolactone ring structures. Substantial lineage-specific differentiation in utilization of sugars, hydroxyacyl chains, and decorating acyl chains was discovered, especially among Ipomoea and Convolvulus - the two largest genera in Convolvulaceae. Adopting a computational, knowledge-based strategy, we further developed a high-recall workflow that successfully explained ~72% of the MS/MS fragments, predicted the structural components of 11/13 previously characterized RGs, and partially annotated ~45% of the RGs. Overall, this study improves our understanding of phytochemical diversity and lays a foundation for characterizing the evolutionary mechanisms underlying RG diversification.

α- and β-tubulin form heterodimers, with GTPase activity, that assemble into microtubules. Like other GTPases, the nucleotide-bound state of tubulin heterodimers controls whether the molecules are in a biologically active or inactive state. While -tubulin in the heterodimer is constitutively bound to GTP, β-tubulin can be bound to either GDP (GDP-tubulin) or GTP (GTP-tubulin). GTP-tubulin hydrolyzes its GTP to GDP following assembly into a microtubule and, upon disassembly, must exchange its bound GDP for GTP to participate in subsequent microtubule polymerization. Tubulin dimers have been shown to exhibit rapid intrinsic nucleotide exchange in vitro, leading to a commonly accepted belief that a tubulin guanine nucleotide exchange factor (GEF) may be unnecessary in cells. Here, we use quantitative binding assays to show that BuGZ, a spindle assembly factor, binds tightly to GDP-tubulin, less tightly to GTP-tubulin, and weakly to microtubules. We further show that BuGZ promotes the incorporation of GTP into tubulin using a nucleotide exchange assay. The discovery of a tubulin GEF suggests a mechanism that may aid rapid microtubule assembly dynamics in cells.

How, when, and why organisms age are fascinating issues that can only be fully addressed by adopting an evolutionary perspective. Consistently, the main evolutionary theories of ageing, namely the Mutation Accumulation theory, the Antagonistic Pleiotropy theory, and the Disposable Soma theory, have formulated stimulating hypotheses that structure current debates on both the proximal and ultimate causes of organismal ageing. However, all these theories leave a common area of biology relatively under-explored. The Mutation Accumulation theory and the Antagonistic Pleiotropy theory were developed under the traditional framework of population genetics, and therefore are logically centred on the ageing of individuals within a population. The Disposable Soma theory, based on principles of optimising physiology, mainly explains ageing within a species. Consequently, current leading evolutionary theories of ageing do not explicitly model the countless interspecific and ecological interactions, such as symbioses and host-microbiomes associations, increasingly recognized to shape organismal evolution across the Web of Life. Moreover, the development of network modelling supporting a deeper understanding on the molecular interactions associated with ageing within and between organisms is also bringing forward new questions regarding how and why molecular pathways associated with ageing evolved. Here, we take an evolutionary perspective to examine the effects of organismal interactions on ageing across different levels of biological organisation, and consider the impact of surrounding and nested systems on organismal ageing. We also apply this perspective to suggest open issues with potential to expand the standard evolutionary theories of ageing.

The gut is continuously invaded by diverse bacteria from the diet and the environment, yet microbiome composition is relatively stable over time for host species ranging from mammals to insects, suggesting host-specific factors may selectively maintain key species of bacteria. To investigate host specificity, we used gnotobiotic Drosophila, microbial pulse-chase protocols, and microscopy to investigate the stability of different strains of bacteria in the fly gut. We show that a host-constructed physical niche in the foregut selectively binds bacteria with strain-level specificity, stabilizing their colonization. Primary colonizers saturate the niche and exclude secondary colonizers of the same strain, but initial colonization by Lactobacillus species physically remodels the niche through production of a glycan-rich secretion to favor secondary colonization by unrelated commensals in the Acetobacter genus. Our results provide a mechanistic framework for understanding the establishment and stability of a multi-species intestinal microbiome.

The fate of highly volatile elements (H, C, F, Cl and S) during planetary accretion and differentiation is debated. Recent analyses of water in non-carbonaceous chondrites (RC, OC, EC) and achondrites (angrites, eucrites) have been used to argue that inner solar system parent bodies accreted and retained their highly volatile element budgets from their primary feedstock without substantial loss during accretion, metamorphism and differentiation. An alternative model posits that differentiated inner solar system parent bodies (e.g., the angrite parent body, 4 Vesta, Earth) derived the majority of their water from a carbonaceous chondrite-like source, delivered during the final stages of accretion.In order to add new constraints to this debate, we have measured water in nominally anhydrous minerals, melt inclusions, and interstitial glass in ureilites, the largest group of primitive achondrites in the terrestrial meteorite collection. Primitive achondrites did not experience global melting and homogenization. Therefore, these meteorites capture part of the transition from chondritic to achondritic parent bodies, allowing us to constrain the fate of water during the earliest stages of differentiation. Our nano-scale secondary ion mass spectrometry (nanoSIMS) analyses allow us to assess the viability of ureilite-like material as a potential source of terrestrial water. Analyses of pigeonite in main group ureilites yield a range of 2.0 - 6.0 lg/g H2O, and analyses of high-Ca pyroxene and glass (glassy melt inclusions and interstitial glass) in the Almahata Sitta ureilitic trachyandesite yield ranges of 13 - 19 lg/g H2O and 44 - 216 lg/g H2O, respectively. Mass balance, incremental melting, and batch melting calculations yield a preferred ureilite parent body H2O content of 2 - 20 lg/g, similar to previous estimates of water in the eucrite parent body (4 Vesta), but lower than estimates of Earth's water budget. With these data, we demonstrate that 1) the ureilite parent body is H2O-depleted relative to the Earth; 2) ureilite-like material is unlikely to be a primary source of H2O to the Earth; 3) C and H are not necessarily coupled elements during planetary accretion and thermal processing; and 4) accretion, heating, partial melting, and degassing of rocky planetesimals likely results in significant depletion of H2O.& COPY; 2022 Elsevier Ltd. All rights reserved.

High-resolution imaging of galaxies in rest-frame UV has revealed the existence of giant star-forming clumps prevalent in high-redshift galaxies. Studying these substructures provides important information about their formation and evolution and informs theoretical galaxy evolution models. We present a new method to identify clumps in galaxies' high-resolution rest-frame UV images. Using imaging data from CANDELS and UVCANDELS, we identify star-forming clumps in an HST/F160W <= 25 AB mag sample of 6767 galaxies at 0.5 <= z <= 3 in four fields, GOODS-N, GOODS-S, EGS, and COSMOS. We use a low-passband filter in Fourier space to reconstruct the background image of a galaxy and detect small-scale features (clumps) on the background-subtracted image. Clumpy galaxies are defined as those having at least one off-center clump that contributes a minimum of 10% of the galaxy's total rest-frame UV flux. We measure the fraction of clumpy galaxies (f(clumpy)) as a function of stellar mass, redshift, and galaxy environment. Our results indicate that f(clumpy) increases with redshift, reaching similar to 65% at z similar to 1.5. We also find that fclumpy in low-mass galaxies (9.5 <= log (M*/M circle dot) <= 10) is 10% higher compared to that of their high-mass counterparts (log M*/M circle dot) > 10.5). Moreover, we find no evidence of significant environmental dependence of f(clumpy) for galaxies at the redshift range of this study. Our results suggest that the fragmentation of gas clouds under violent disk instability remains the primary driving mechanism for clump formation, and incidents common in dense environments, such as mergers, are not the dominant processes.

The Earth's core formation mechanism determines the siderophile and light elements abundance in the Earth's mantle and core. Previous studies suggest that the sink of massive liquid metal through a solid silicate mantle resulted in an unequilibrated core and the lower mantle. Here, we show that percolation can be an effective core formation mechanism in a convective mantle and modify the compositions of the lower mantle and the core through partial equilibration between them. This grain-scale metal flow has a high velocity to meet the time constraint of core formation. The Earth's core could have been enriched with light elements, and the abundance of the moderately siderophile elements in the mantle could have been elevated to the current value during this process. The trapped core-forming melt in the mantle during the stress-induced percolation can also explain the highly siderophile element abundance in the Earth's mantle.

Heterotopic ossification (HO) is a pathological process resulting in aberrant bone formation and often involves synovial lined tissues. During this process, mesenchymal progenitor cells undergo endochondral ossification. Nonetheless, the specific cell phenotypes and mechanisms driving this process are not well understood, in part due to the high degree of heterogeneity of the progenitor cells involved. Here, using a combination of lineage tracing and single-cell RNA sequencing (scRNA-seq), we investigated the extent to which synovial/tendon sheath progenitor cells contribute to heterotopic bone formation. For this purpose, Tppp3 (tubulin polymerization-promoting protein family member 3)-inducible reporter mice were used in combination with either Scx (Scleraxis) or Pdgfra (platelet derived growth factor receptor alpha) reporter mice. Both tendon injury- and arthroplasty-induced mouse experimental HO models were utilized. ScRNA-seq of tendon-associated traumatic HO suggested that Tppp3 is an early progenitor cell marker for either tendon or osteochondral cells. Upon HO induction, Tppp3 reporter(+) cells expanded in number and partially contributed to cartilage and bone formation in either tendon- or joint-associated HO. In double reporter animals, both Pdgfra(+)Tppp3(+) and Pdgfra(+)Tppp3(-) progenitor cells gave rise to HO-associated cartilage. Finally, analysis of human samples showed a substantial population of TPPP3-expressing cells overlapping with osteogenic markers in areas of heterotopic bone. Overall, these data demonstrate that synovial/tendon sheath progenitor cells undergo aberrant osteochondral differentiation and contribute to HO after trauma.