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Abstract
To evaluate the feasibility and capability of using filter-feeding bivalves as biofilters for organic waste derived from fish faeces and feed wastage in marine fish culture activities, a polyculture system comprising fish and green-lipped mussels Perna viridis was developed by transplantation of mussels into fish cages. As a control, mussels from the same population were simultaneously transplanted to a distant reference site free of effects from fish farming activities. After 3 mo acclimation, samples of mussel tissue, particulate organic matter (POM), fish feed and fish faeces were collected for measurements of carbon and nitrogen isotopic ratios and fatty acid profiles. Enrichment of C-13 and N-15 in mussel tissue collected inside the fish cages as compared to those at the reference site indicated the uptake and assimilation of isotopically heavier fish feed and fish faeces. Compared with mussels from the reference site, the pattern of fatty acid profiles and single fatty acids of mussels in fish cages also tended to be closer to fatty acid profiles of fish feed from fish farms. Based on the concentration-weighted isotope mixing model, the proportions of mussel biomass assimilated from POM, fish feed and fish faeces to mussel dietary consumption were 68.3, 27.5 and 4.2%, respectively. The direct uptake of organic waste from fish farms by filter-feeding mussels is different to their consumption of phytoplanktonic biomass, because the nutrient flux is shifted between these 2 distinct pathways.
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Abstract
E7, a single domain Family 33 cellulose binding module (CBM) protein, and E8, a non-catalytic, three-domain protein consisting of a Family 33 CBM, a FNIII domain, followed by a Family 2 CBM, were cloned, expressed, purified, and characterized. Western blots showed that E7 and E8 were induced and secreted when Thermobifida fusca was grown on cellobiose, Solka floc, switchgrass, or alfalfa as well as on beta-1,3 linked glucose molecules such as laminaribiose or pachyman. E8 bound well to alpha- and beta-chitin and bacterial microcrystalline cellulose (BMCC) at all pHs tested. E7 bound strongly to P-chitin, less well to a-chitin and more weakly to BMCC than E8. Filter paper binding assays showed that E7 was 28% bound, E8 was 39% bound, a purified CBM2 binding domain from Cel6B was 88% bound, and only 5% of the Cel5A catalytic domain was bound. A C-terminal 6 x His tag influenced binding of both E7 and E8 to these substrates. Filter paper activity assays showed enhanced activity of T. fusca cellulases when E7 or E8 was present. This effect was observed at very low concentrations of cellulases or at very long times into the reaction and was mainly independent of the type of cellulase and the number of cellulases in the mixture. E8, and to a lesser extent E7, significantly enhanced the activity of Serratia marscescens Chitinase C on beta-chitin.
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Abstract
We have previously described the creation and analysis of a Notch1 activity-trap mouse line, Notch1 intramembrane proteolysis-Cre6MT or N1IP::Cre(LO), that marked cells experiencing relatively high levels of Notch1 activation. Here, we report and characterize a second line with improved sensitivity (N1IP::Cre(HI)) to mark cells experiencing lower levels of Notch1 activation. This improvement was achieved by increasing transcript stability and by restoring the native carboxy terminus of Cre, resulting in a five- to tenfold increase in Cre activity. The magnitude of this effect probably impacts Cre activity in strains with carboxy-terminal Ert2 fusion. These two trap lines and the related line N1IP::Cre(ERT2) form a complementary mapping tool kit to identify changes in Notch1 activation patterns in vivo as the consequence of genetic or pharmaceutical intervention, and illustrate the variation in Notch1 signal strength from one tissue to the next and across developmental time.
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This immunofluorescence image highlights the foregut cell nucleus including the major foregut epithelia organ, the proventriculus, that produces the peritrophic matrix.  Image courtesy of Haolong Zhu.
March 04, 2024
Press Release

Revealing the fruit fly digestive tract’s “command center”

Abstract
We present a comprehensive overview of a volume-complete sample of white dwarfs located within 40 pc of the Sun, a significant proportion of which were detected in Gaia Data Release 3 (DR3). Our DR3 sample contains 1076 spectroscopically confirmed white dwarfs, with just five candidates within the volume remaining unconfirmed (> 99 per cent spectroscopic completeness). Additionally, 28 white dwarfs were not in our initial selection from Gaia DR3, most of which are in unresolved binaries. We use Gaia DR3 photometry and astrometry to determine a uniform set of white dwarf parameters, including mass, effective temperature, and cooling age. We assess the demographics of the 40 pc sample, specifically magnetic fields, binarity, space density, and mass distributions.
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Abstract
Compression of small molecules can induce solid-state reactions that are difficult or impossible under conventional, solution-phase conditions. Of particular interest is the topochemical-like reaction of arenes to produce polymeric nanomaterials. However, high reaction onset pressures and poor selectivity remain significant challenges. Herein, the incorporation of electron-withdrawing and -donating groups into pi-stacked arenes is proposed as a strategy to reduce reaction barriers to cycloaddition and onset pressures. Nevertheless, competing side-chain reactions between functional groups represent alternative viable pathways. For the case of a diaminobenzene:tetracyanobenzene cocrystal, amidine formation between amine and cyano groups occurs prior to cycloaddition with an onset pressure near 9 GPa, as determined using vibrational spectroscopy, X-ray diffraction, and first-principles calculations. This work demonstrates that reduced-barrier cycloaddition reactions are theoretically possible via strategic functionalization; however, the incorporation of pendant groups may enable alternative reaction pathways. Controlled reactions between pendant groups represent an additional strategy for producing unique polymeric nanomaterials.
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Abstract
Microbial heterotrophs (‘picoheterotrophs’) drive global carbon cycling, but how to quantitatively organize their functional complexity remains unclear. Here, we generate a global -scale, mechanistic understanding of marine picoheterotrophic functional biogeography with a novel model -data synthesis. We build picoheterotrophic diversity into a trait -based marine ecosystem model along two axes: substrate lability and optimization for growth rate (copiotrophy) vs. substrate affinity (oligotrophy). Using genetic sequences along an Alaska -to -Antarctica Pacific Ocean transect, we compile 21 picoheterotrophic guilds and estimate their degree of copiotrophy. Data and model agreement suggests that gradients in predation and substrate lability predominantly set biogeographical patterns, and identifies ‘slow copiotrophs’ subsisting at depth. Results demonstrate the predictability of the marine microbiome and connect ecological dynamics with carbon storage, crucial for projecting changes in a warming ocean.
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Abstract
Accurate and precise measurements of spectroradiometric temperature are crucial for many high pressure experiments that use diamond anvil cells or shock waves. In experiments with sub-millisecond timescales, specialized detectors such as streak cameras or photomultiplier tubes are required to measure temperature. High accuracy and precision are difficult to attain, especially at temperatures below 3000K. Here, we present a new spectroradiometry system based on multianode photomultiplier tube technology and passive readout circuitry that yields a 0.24 s rise-time for each channel. Temperature is measured using five color spectroradiometry. During high pressure pulsed Joule heating experiments in a diamond anvil cell, we document measurement precision to be ±30 K at temperatures as low as 2000K during single-shot heating experiments with 0.6 s time-resolution. Ambient pressure melting tests using pulsed Joule heating indicate that the accuracy is ±80 K in the temperature range 1800-2700K.
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Abstract
By directly altering microscopic interactions, pressure provides a powerful tuning knob for the exploration of condensed phases and geophysical phenomena1. The megabar regime represents an interesting frontier, in which recent discoveries include high-temperature superconductors, as well as structural and valence phase transitions2-6. However, at such high pressures, many conventional measurement techniques fail. Here we demonstrate the ability to perform local magnetometry inside a diamond anvil cell with sub-micron spatial resolution at megabar pressures. Our approach uses a shallow layer of nitrogen-vacancy colour centres implanted directly within the anvil7-9; crucially, we choose a crystal cut compatible with the intrinsic symmetries of the nitrogen-vacancy centre to enable functionality at megabar pressures. We apply our technique to characterize a recently discovered hydride superconductor, CeH9 (ref.10). By performing simultaneous magnetometry and electrical transport measurements, we observe the dual signatures of superconductivity: diamagnetism characteristic of the Meissner effect and a sharp drop of the resistance to near zero. By locally mapping both the diamagnetic response and flux trapping, we directly image the geometry of superconducting regions, showing marked inhomogeneities at the micron scale. Our work brings quantum sensing to the megabar frontier and enables the closed-loop optimization of superhydride materials synthesis.
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