Bolbometopon muricatum are ecologically unique mega-consumers in coral reef ecosystems. They primarily divide their dietary intake between living scleractinian corals and coral rock, a substrate richly colonized by non-coral biota. Here we examine how the chemical, structural, and energetic content of these two main classes of forage material may influence B. muricatum feeding behavior and selectivity. We then also examine nutrient content, pH, and alkalinity of the carbonate-rich feces of B. muricatum as a step toward understanding how B. muricatum defecation could affect reef nutrient dynamics and localized seawater chemistry. Our results suggest that by most measures, coral rock constitutes a richer food source than living corals, exhibiting higher levels of eight biologically relevant elements, and containing approximately three times greater caloric value than living corals. Additionally, the two forage types also presented distinct mineralogy, with the coral rock resembling a Mg-enriched carbonate phase in contrast to the primarily aragonitic live corals. Despite the fact that individual B. muricatum excrete tons of macerated coral annually, the low measured concentrations of N and P in feces suggest that this excretion may have relatively minor effects of reef macronutrient budgets. We also observed negligible local-scale impacts of B. muricatum feces on seawater pH and alkalinity. The approaches applied here integrate perspectives from marine biogeochemistry, materials science, and ecology. Collectively, these results provide preliminary insight into how reef chemistry could shape foraging of this dominant and vulnerable coral reef consumer and how it, in turn, might affect the chemistry of these reefs.

Despite growing interest in utilizing microbial-based methods for improving crop growth, much work still remains in elucidating how beneficial plant-microbe associations are established, and what role soil amendments play in shaping these interactions. Here, we describe a set of experiments that test the effect of a commercially available soil amendment, VESTA, on the soil and strawberry (Fragaria x ananassa Monterey) root bacterial microbiome. The bacterial communities of the soil, rhizosphere, and root from amendment-treated and untreated fields were profiled at four time points across the strawberry growing season using 16S rRNA gene amplicon sequencing on the Illumina MiSeq platform. In all sample types, bacterial community composition and relative abundance were significantly altered with amendment application. Importantly, time point effects on composition are more pronounced in the root and rhizosphere, suggesting an interaction between plant development and treatment effect. Surprisingly, there was slight overlap between the taxa within the amendment and those enriched in plant and soil following treatment, suggesting that VESTA may act to rewire existing networks of organisms through an, as of yet, uncharacterized mechanism. These findings demonstrate that a commercial microbial soil amendment can impact the bacterial community structure of both roots and the surrounding environment.

Recent work revealed an active biological chlorine cycle in coastal Arctic tundra of northern Alaska. This raised the question of whether chlorine cycling was restricted to coastal areas or if these processes extended to inland tundra. The anaerobic process of organohalide respiration, carried out by specialized bacteria like Dehalococcoides, consumes hydrogen gas and acetate using halogenated organic compounds as terminal electron acceptors, potentially competing with methanogens that produce the greenhouse gas methane. We measured microbial community composition and soil chemistry along an similar to 262-km coastal-inland transect to test for the potential of organohalide respiration across the Arctic Coastal Plain and studied the microbial community associated with Dehalococcoides to explore the ecology of this group and its potential to impact C cycling in the Arctic. Concentrations of brominated organic compounds declined sharply with distance from the coast, but the decrease in organic chlorine pools was more subtle. The relative abundances of Dehalococcoides were similar across the transect, except for being lower at the most inland site. Dehalococcoides correlated with other strictly anaerobic genera, plus some facultative ones, that had the genetic potential to provide essential resources (hydrogen, acetate, corrinoids, or organic chlorine). This community included iron reducers, sulfate reducers, syntrophic bacteria, acetogens, and methanogens, some of which might also compete with Dehalococcoides for hydrogen and acetate. Throughout the Arctic Coastal Plain, Dehalococcoides is associated with the dominant anaerobes that control fluxes of hydrogen, acetate, methane, and carbon dioxide. Depending on seasonal electron acceptor availability, organohalide-respiring bacteria could impact carbon cycling in Arctic wet tundra soils.

Ectomycorrhizal symbiosis is essential for the nutrition of most temperate forest trees and helps regulate the movement of carbon (C) and nitrogen (N) through forested ecosystems. The factors governing the exchange of plant C for fungal N, however, remain obscure. Because competition and soil resources may influence ectomycorrhizal resource movement, we performed a 10-month split-root microcosm study using Pinus muricata seedlings with Thelephora terrestris, Suillus pungens, or no ectomycorrhizal fungus, under two N concentrations in artificial soil. Fungi competed directly with roots and indirectly with each other. We used stable isotope enrichment to track plant photosynthate and fungal N. For T. terrestris, plants received N commensurate with the C given to their fungal partners. Thelephora terrestris was a superior mutualist under high-N conditions. For S. pungens, plant C and fungal N exchange were not coupled. However, in low-N conditions, plants preferentially allocated C to S. pungens rather than T. terrestris. Our results suggest that ectomycorrhizal resource transfer depends on competitive and nutritional context. Plants can exchange C for fungal N, but coupling of these resources can depend on the fungal species and soil N. Understanding the diversity of fungal strategies, and how they change with environmental context, reveals mechanisms driving this important symbiosis.

Diversity of plants and animals influence soil carbon through their contributions to soil organic matter (SOM). However, we do not know whether mammal and tree communities affect SOM composition in the same manner. This question is relevant because not all forms of carbon are equally resistant to mineralization by microbes and thus, relevant to carbon storage. We analyzed the elemental and molecular composition of 401 soil samples, with relation to the species richness of 83 mammal and tree communities at a landscape scale across 4.8 million hectares in the northern Amazon. We found opposite effects of mammal and tree richness over SOM composition. Mammal diversity is related to SOM rich in nitrogen, sulfur and iron whereas tree diversity is related to SOM rich in aliphatic and carbonyl compounds. These results help us to better understand the role of biodiversity in the carbon cycle and its implications for climate change mitigation.

Microbial communities and dissolved organic matter (DOM) are intrinsically linked within the global carbon cycle. Demonstrating this link on a molecular level is hampered by the complexity of both counterparts. We have now investigated this connection within intertidal beach sediments, characterized by a runnel-ridge system and subterranean groundwater discharge. Using datasets generated by Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) and Ilumina-sequencing of 16S rRNA genes, we predicted metabolic functions and determined links between bacterial communities and DOM composition. Four bacterial clusters were defined, reflecting differences within the community compositions. Those were attributed to distinct areas, depths, or metabolic niches. Cluster I was found throughout all surface sediments, probably involved in algal-polymer degradation. In ridge and low water line samples, cluster III became prominent. Associated porewaters indicated an influence of terrestrial DOM and the release of aromatic compounds from reactive iron oxides. Cluster IV showed the highest seasonality and was associated with species previously reported from a subsurface bloom. Interestingly, Cluster II harbored several members of the candidate phyla radiation (CPR) and was related to highly degraded DOM. This may be one of the first geochemical proofs for the role of candidate phyla in the degradation of highly refractory DOM.

Thallium (Tl) is classified as a non-(bio)-essential and highly toxic element in the marine environment. Despite its active and passive involvement in bio-cycling processes, it is considered a conservative type element in open ocean settings. Previous studies on the Tl-behavior in the coastal waters of the southern North Sea, however, documented non-conservative Tl-behavior in seasonal and tidal patterns. As drivers for the non-conservative depletion, Tl-fixation in redox stratified adjacent sediments as well as its complexation with algae-bloom derived organic matter were suggested. Due to superimposition by resuspended lithogenic particles, it was not possible to distinguish whether the Tl concentration pattern was induced by biotic or abiotic processes. The main motivation of the present study was to investigate the non-conservative Tl-behavior during a phytoplankton bloom in coastal ocean water masses and to identify potential key drivers. We conducted an indoor mesocosm experiment where artificial seawater was inoculated with a natural phytoplankton and bacteria community from the southern North Sea and incubated under natural light and temperature conditions, mimicking a neritic North Sea water column. The incubation of six weeks covered the different stages of two distinct phytoplankton bloom events as well as a subsequent bacteria bloom. Our results reveal a non-conservative Tl-depletion, which seemed to be primarily caused by the coupling to algae bloom derived OM-cycling. The extent of Tl-depletion was dependent on the amount and the composition of organic matter. While the first phytoplankton bloom, dominated by Diatom-species, did not induce significant deviations of Tl from theoretical conservative behavior, especially the colonial stage (hydrogel formation) of the secondary occurring Phaeocystis sp. bloom induced significant depletions of dissolved Tl with rates up to similar to 27% d(-1). Global extrapolations of potential algae-induced deficits in dissolved Tl and its potential export Tl from the open water column have shown that the processes identified for Tl removal in this study could be responsible for a flux in the range of 4-20% of the total removal previously assumed in Tl mass balances. Our study emphasizes that although Tl is classified as a conservative-type element, biological processes have an impact on the global Tl budget and thus must be considered in the respective oceanographic models. (C) 2021 Elsevier Ltd. All rights reserved.

The temporal dynamics of dissolved organic matter (DOM) are inherently linked with the functioning of aquatic ecosystems. Because DOM represents a complex mixture of millions of different compounds, the statistical analysis of DOM dynamics poses a huge challenge. Here, we present a statistical approach based on hierarchical clustering of time series that groups DOM compounds with synchronous dynamics. We applied this approach to time series of Fourier-transform ion cyclotron resonance mass spectrometry data of DOM sampled over a period of 26 months near Helgoland, an island in the Southern North Sea. We identified three DOM clusters, which represented a total of 1392 different molecular formulae and showed distinct chemical properties and noticeably compound matches within the PubChem database. Correlations of the three DOM clusters with abundance data of prokaryote and phytoplankton species and with environmental parameters provided consistent indications on the potential origin of the clustered compounds. The first cluster integrated terrestrial DOM originating from riverine discharge reaching Helgoland waters. The second cluster was attributed to DOM related to phytoplankton and microbial activity, whereas the third cluster was interpreted as representing the marine refractory DOM background. Accordingly, while further partitioning divided each of the first two clusters into five sub-clusters with distinct temporal dynamics and molecular characteristics, the third cluster persisted as a stable feature. Applying a purely mathematical approach, we thus confirmed the differential dynamics of individual DOM compounds and compound groups and showed that temporal dynamics of dissolved molecules are linked to their origin and transformation history.

Fourier ion cyclotron resonance mass spectrometry (FT-ICR MS), one of the state-of-the-art ultrahigh-resolution techniques, is widely used in dissolved organic matter (DOM) research. As research that focuses on identifying DOM molecular fingerprints increases tremendously, there is and will be an urgent need to compare among studies. Different research groups usually use various types of data processing and interpretation strategies. It is critical to explore if different interpretation strategies will impact the comparability of FT-ICR MS results and their biogeochemical interpretations. To address this question, we selected DOM samples along a freshwater-to-marine continuum to be measured by negative-ion mode electrospray ionization FT-ICR MS. We interpreted the raw MS data using different strategies, compared the results and evaluated the interpretation strategy-induced effects on biogeochemical interpretations. Our results show that a total of 3827 formulas that account for 91.6% +/- 4.1% (on average) of the total intensity are assigned in all interpretation strategies, while 6521 formulas for 8.4% +/- 4.1% (on average) of the total intensity are not commonly assigned in all three interpretation strategies. We conclude that (i) different interpretation strategies do not significantly affect the geochemical stories relied on DOM molecular composition, and (ii) comparison based on intensity results gives more reliable results than the formular number alone. Moreover, we also provide raw and interpreted data (by our different strategies) for the community to compare their interpretation. We aim to call attention to the community for improving the comparability of FT-ICR MS results and facilitating the integration of DOM molecular composition among global studies.