The photosynthetic alga Chlamydomonas. Purchased from Shutterstock.

Palo Alto, CA— A team led by current and former Carnegie plant biologists has undertaken the largest ever functional genomic study of a photosynthetic organism. Their work, published in Nature Genetics, could inform strategies for improving agricultural yields and mitigating climate change.

Photosynthesis is the biochemical process by which plants, algae, and certain bacteria are able to convert the Sun’s energy into chemical energy in the form of carbohydrates.

“It is the foundation upon which life as we know it is able to exist,” said Carnegie’s Arthur Grossman, a co-author on the paper. “It makes our atmosphere oxygen rich while capturing a percentage of the climate-change-causing greenhouse gases, mostly CO2, that are spewed into the atmosphere by human activity, and it is the mainstay of our food supply.”

Yet despite its fundamental importance, many of the genes associated with photosynthesis remain uncharacterized. Luckily, algae present an accessible vehicle for elucidating the genetic information that underpins this vital process.

A catalog of mutants of the single-celled photosynthetic green alga Chlamydomonas reinhardtii that was initiated by Princeton University’s Martin Jonikas during his tenure as a Carnegie staff associate enabled a collaborative team of plant scientists to begin to understand the functions of thousands of genes that are present in photosynthetic organisms.

Chlamydomonas represents a group of photosynthetic algae that are found around the globe in fresh and saltwater, moist soils, and even at the surface of snow. They readily grow in the lab, even in darkness if given the right nutrients. This makes Chlamydomonas an excellent research tool for plant biologists, especially for those interested in the genetics of the photosynthetic apparatus, as well as many other aspects of plant biochemistry, such as responses to light and stress.

“We started with a collection of 58,000 Chlamydomonas mutants and exposed them to a large variety of conditions and chemical stressors,” Jonikas explained. “Quantifying an individual mutant’s growth enabled us to see which genes contribute to success in each environment and to start linking many of these genes to adaptive traits.”

This study represented 78 percent of Chlamydomonas genes—nearly 14,000—providing a framework for prioritizing which genes are good candidates for further research and enabling scientists to begin to hypothesize about the possible functions of poorly understood genes in photosynthetic organisms.

“We anticipate that our work will guide the functional characterization of genes across the tree of life,” Grossman said.

“We are very happy to see how resources generated by Carnegie scientists are enabling the research community and advancing the field at such a broad scale,” added Zhiyong Wang, the Acting Director of Carnegie’s Department of Plant Biology.

The knowledge gleaned from this research could underpin strategies for improving the yields of important food and biofuel crops in a warming world, as well as programs to capture and store carbon pollution from the atmosphere.

Co-authors on the paper included Friedrich Fauser, Josep Vilarrasa-Blasi, José Dinneny, Rick Kim, and Robert Jinkerson from Carnegie, as well as collaborators from Stanford University, University of California Riverside, Duke University, University of California San Francisco, UCLA, UC Berkeley, and Lawrence Berkeley National Laboratory.


This project was supported by the U.S. National Institutes of Health, the U.S. National Science Foundation, the Simons Foundation, the Howard Hughes Medical Institute, a German Academic Exchange Service research fellowship, the Life Sciences Research Foundation, and a Swiss National Science Foundation Advanced Postdoc Mobility Fellowship.

Work in the Merchant laboratory is supported by a cooperative agreement with the U.S. Department of Energy Office of Science, Office of Biological and Environmental Research program.

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Plant Genetics