Disease resistance is associated with a plant defense response that involves an integrated set of signal transduction pathways. Changes in the expression patterns of 2.375 selected genes were examined simultaneously by cDNA microarray analysis in Arabidopsis thaliana after inoculation with an incompatible fungal pathogen Alternaria brassicicola or treatment with the defense-related signaling molecules salicylic acid (SA), methyl jasmonate (MJ), or ethylene, Substantial changes (up- and down-regulation) in the steady-state abundance of 705 mRNAs were observed in response to one or more of the treatments, including known and putative defense-related genes and 106 genes with no previously described function or homology, In leaf tissue inoculated with A. brassicicola, the abundance of 168 mRNAs was increased more than 2.5-fold, whereas that of 39 mRNAs was reduced. Similarly, the abundance of 192, 221, and 55 mRNAs was highly (>2.5-fold) increased after treatment with SA, MJ, and ethylene, respectively. Data analysis revealed a surprising level of coordinated defense responses, including 169 mRNAs regulated by multiple treatments/defense pathways. The largest number of genes coinduced (one of four induced genes) and corepressed was found after treatments with SA and MJ. In addition, 50% of the genes induced by ethylene treatment were also induced by MJ treatment. These results indicated the existence of a substantial network of regulatory interactions and coordination occurring during plant defense among the different defense signaling pathways, notably between the salicylate and jasmonate pathways that were previously thought to act in an antagonistic fashion.

The Sloan Digital Sky Survey (SDSS) is an imaging and spectroscopic survey that will eventually cover approximately one-quarter of the celestial sphere and collect spectra of 10 6 galaxies, 100,000 quasars, 30,000 stars, and 30,000 serendipity targets. In 2001 June, the SDSS released to the general astronomical community its early data release, roughly 462 deg(2) of imaging data including almost 14 million detected objects and 54,008 follow-up spectra. The imaging data were collected in drift-scan mode in five bandpasses (u, g, r, i, and z); our 95% completeness limits for stars are 22.0, 22.2, 22.2, 21.3, and 20.5, respectively. The photometric calibration is reproducible to 5%, 3%, 3%, 3%, and 5%, respectively. The spectra are flux- and wavelength-calibrated, with 4096 pixels from 3800 to 9200 Angstrom at R approximate to 1800. We present the means by which these data are distributed to the astronomical community, descriptions of the hardware used to obtain the data, the software used for processing the data, the measured quantities for each observed object, and an overview of the properties of this data set.

Pathogen challenge can trigger an integrated set of signal transduction pathways, which ultimately leads to a state of "high alert," otherwise known as systemic or induced resistance in tissue remote to the initial infection. Although large-scale gene expression during systemic acquired resistance, which is induced by salicylic acid or necrotizing pathogens has been previously reported using a bacterial pathogen, the nature of systemic defense responses triggered by an incompatible necrotrophic fungal pathogen is not known. We examined transcriptional changes that occur during systemic defense responses in Arabidopsis plants inoculated with the incompatible fungal pathogen Alternaria brassicicola. Substantial changes (2.00-fold and statistically significant) were demonstrated in distal tissue of inoculated plants for 35 genes (25 up-regulated and 10 down-regulated), and expression of a selected subset of systemically expressed genes was confirmed using real-time quantitative polymerase chain reaction. Genes with altered expression in distal tissue included those with putative functions in cellular housekeeping, indicating that plants modify these vital processes to facilitate a coordinated response to pathogen attack. Transcriptional up-regulation of genes encoding enzymes functioning in the beta-oxidation pathway of fatty acids was particularly interesting. Transcriptional up-regulation was also observed for genes involved in cell wall synthesis and modification and genes putatively involved in signal transduction. The results of this study, therefore, confirm the notion that distal tissue of a pathogen-challenged plant has a heightened preparedness for subsequent pathogen attacks.

Six low-luminosity active galactic nuclei (AGNs) have been imaged at multiple frequencies from 1.7 to 43 GHz (2.3-15 GHz for three of the galaxies) using the Very Long Baseline Array. In spite of dynamic ranges of about 100 in several frequency bands, all six galaxies remain unresolved, with size limits at 8.4 GHz of 10(3)-10(4) times the Schwarzschild radii of the black holes inferred at their galactic centers. The galaxy spectra are roughly flat from 1.7 to 43 GHz, rather than steepening to classical optically thin synchrotron spectra at high frequencies. Although the spectral slopes somewhat resemble predictions for advection-dominated accretion flows, the luminosities are too high for the black hole masses of the galaxies, and the slight spectral steepening at high frequencies cannot be explained by standard simple models of such accretion flows. In contrast, compact jets can accommodate the average spectral index, the relatively high radio luminosity, and the unresolved appearance, but only if the jets in all six galaxies are fairly close to our line of sight. This constraint is in agreement with inclination angle predictions for five of the six AGNs based on the dusty torus unification model.

Establishing or ruling out, either through solid mass measurements or upper limits, the presence of intermediate-mass black holes (IMBHs; with masses of 10(2) - 10(5) M-circle dot) at the centers of star clusters would profoundly impact our understanding of problems ranging from the formation and long-term dynamical evolution of stellar systems, to the nature of the seeds and the growth mechanisms of supermassive black holes. While there are sound theoretical arguments both for and against their presence in today's clusters, observational studies have so far not yielded truly conclusive IMBH detections nor upper limits. We argue that the most promising approach to solving this issue is provided by the combination of measurements of the proper motions of stars at the centers of Galactic globular clusters and dynamical models able to take full advantage of this type of data set. We present a program based on HST observations and recently developed tools for dynamical analysis designed to do just that.

We present an observational study of the Type IIn supernovae (SNe IIn) 2005ip and 2006jd. Broadband UV, optical, and near-IR photometry, and visual-wavelength spectroscopy of SN 2005ip complement and extend upon published observations to 6.5 years past discovery. Our observations of SN 2006jd extend from UV to mid-infrared wavelengths, and like SN 2005ip, are compared to reported X-ray measurements to understand the nature of the progenitor. Both objects display a number of similarities with the 1988Z-like subclass of SN IIn including (1) remarkably similar early-and late-phase optical spectra, (2) a variety of high-ionization coronal lines, (3) long-duration optical and near-IR emission, and (4) evidence of cold and warm dust components. However, diversity is apparent, including an unprecedented late-time r-band excess in SN 2006jd. The observed differences are attributed to differences between the mass-loss history of the progenitor stars. We conclude that the progenitor of SN 2006jd likely experienced a significant mass-loss event during its pre-SN evolution akin to the great 19th century eruption of. Carinae. Contrarily, as advocated by Smith et al., the circumstellar environment of SN 2005ip is found to be more consistent with a clumpy wind progenitor.

Aims. We provide additional observational evidence that some Type Ia supernovae (SNe Ia) show signatures of circumstellar interaction (CSI) with hydrogen-rich material.

The use of ensemble filters for estimating sources and sinks of carbon dioxide (CO2) is becoming increasingly common, because they provide a relatively computationally efficient framework for assimilating high-density observations of CO2. Their applicability for estimating fluxes at high-resolutions and the equivalence of their estimates to those from more traditional "batch" inversion methods have not been demonstrated, however. In this study, we introduce a Geostatistical Ensemble Square Root Filter (GEnSRF) as a prototypical filter and examine its performance using a synthetic data study over North America at a high spatial (1 degrees x 1 degrees) and temporal (3-hourly) resolution. The ensemble performance, both in terms of estimates and associated uncertainties, is benchmarked against a batch inverse modeling setup in order to isolate and quantify the degradation in the estimates due to the numerical approximations and parameter choices in the ensemble filter. The examined case studies demonstrate that adopting state-of-the-art covariance inflation and localization schemes is a necessary but not sufficient condition for ensuring good filter performance, as defined by its ability to yield reliable flux estimates and uncertainties across a range of resolutions. Observational density is found to be another critical factor for stabilizing the ensemble performance, which is attributed to the lack of a dynamical model for evolving the ensemble between assimilation times. This and other results point to key differences between the applicability of ensemble approaches to carbon cycle science relative to its use in meteorological applications where these tools were originally developed.

Context. Supernova 1987A revealed that a blue supergiant (BSG) star can end its life as a core-collapse supernova (SN). SN 1987A and other similar objects exhibit properties that distinguish them from ordinary Type II Plateau (IIP) SNe, whose progenitors are believed to be red supergiants (RSGs). Similarities among 1987A-like events include a long rise to maximum, early luminosity fainter than that of normal Type IIP SNe, and radioactivity acting as the primary source powering the light curves.

We describe observed properties of the Type Iax class of supernovae (SNe Iax), consisting of SNe observationally similar to its prototypical member, SN 2002cx. The class currently has 25 members, and we present optical photometry and/ or optical spectroscopy for most of them. SNe Iax are spectroscopically similar to SNe Ia, but have lower maximum-light velocities (2000 less than or similar to broken vertical bar v broken vertical bar less than or similar to 8000 km s(-1)), typically lower peak magnitudes (-14.2 >= M-V,M-peak greater than or similar to -18.9 mag), and most have hot photospheres. Relative to SNe Ia, SNe Iax have low luminosities for their light-curve shape. There is a correlation between luminosity and light-curve shape, similar to that of SNe Ia, but offset from that of SNe Ia and with larger scatter. Despite a host-galaxy morphology distribution that is highly skewed to late-type galaxies without any SNe Iax discovered in elliptical galaxies, there are several indications that the progenitor stars are white dwarfs (WDs): evidence of C/ O burning in their maximum-light spectra, low (typically similar to 0.5 M-circle dot) ejecta masses, strong Fe lines in their late-time spectra, a lack of X-ray detections, and deep limits on massive stars and star formation at the SN sites. However, two SNe Iax show strong He lines in their spectra. The progenitor system and explosion model that best fits all of the data is a binary system of a C/ O WD that accretes matter from a He star and has a deflagration. At least some of the time, this explosion will not disrupt the WD. The small number of SNe in this class prohibit a detailed analysis of the homogeneity and heterogeneity of the entire class. We estimate that in a given volume there are 31(-13)(+17) SNe Iax for every 100 SNe Ia, and for every 1M(circle dot) of iron generated by SNe Ia at z = 0, SNe Iax generate similar to 0.036M(circle dot). Being the largest class of peculiar SNe, thousands of SNe Iax will be discovered by LSST. Future detailed observations of SNe Iax should further our understanding of both their progenitor systems and explosions as well as those of SNe Ia.