GSM1362932: Chlamydomonas reinhardtii CC-1690 (21gr) phosphate deprivation
2014
Gene Expression Omnibus
AGJM21PhMTS Illumina's proprietary software was used for basecalling.The reads were aligned using bowtie in single-end mode and with a maximum tolerance of 3 mismatches to the Au10.2 transcripts sequences (http://www.phytozome.net/chlamy), corresponding to the version 4.0 assembly of the Chlamydomonas genome.Expression estimates were obtained for each individual run in units of RPKMs (reads per kilobase of mappable transcript length per million mapped reads) after normalization by the number of aligned reads and transcript mappable length.Genome_build: version 4.0 assembly of the Chlamydomonas genome (http://genome.jgi-psf.org/Chlre4/Chlre4.home.html)Supplementary_files_format_and_content: Processed files correpond to average expression estimates per experiment in units of RPKMs.