Genomic Resources At Carnegie Embryology

Resources

Sequencing

• Illumina HiSeq 2000 and NextSeq 500
  • Illumina Adapter Sequences
  • Illumina TruSeq Nano DNA
  • Illumina Nextera XT DNA
  • Illumina TruSeq RNA v2 using Invitrogen SuperScript II RT
  • Illumina TruSeq Stranded Total RNA with Ribo-Zero Gold
  • Illumina Ribo-Zero Gold rRNA Removal
  • NuGEN Ovation RNA-Seq System V2
  • ARCTURUS PicoPure RNA Isolation Kit
  • Zamore Lab Small RNA Sequencing
• Covaris M220 Focused-ultrasonicator
• Thermo Scientific NanoDrop 2000
• Agilent 2100 Bioanalyzer
  • Agilent High Sensitivity DNA Kit #5067-4626
  • Agilent RNA 6000 Pico Kit #5067-1513
• MJ Research Tetrad PTC-225 thermal cyclers
• Bio-Rad CFX96 Touch Real-Time PCR System
• BD Biosciences FACSAria III

Compute

• Carnegie Institution HPC at SRCF
• Amazon Web Services with Education credits
• Data Intensive Academic Grid
• Galaxy
• iPlant Collaborative
• Maryland Advanced Research Computing Center
• Extreme Science and Engineering Discovery Environment

Services

• Next Generation Sequencing Center
• Genetic Resources Core Facility
• Deep Sequencing & Microarray Core
• BioTeam

Murphy Lab

• Information on the Drosophila Gateway Vector Collection.