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Abstract
Topographic correction methods rarely consider the canopy parameter effects directly and explicitly for sloping canopies. In order to address this problem, the topographic correction method MFM-GOST2 was developed by implementing the second version of the Geometric-Optical model for Sloping Terrains (the GOST2 model) in the multiple forward mode (MFM) inversion framework. First, a look up table (LUT) was constructed by multiple forward modeling of the GOST2 model; second, the radiance of a remotely sensed image and its corresponding topographic data were used for searching potential canopy parameter combinations from the LUT; and third, the corrected radiance was determined by averaging potential radiances of horizontal canopies from the LUT according to the canopy parameter combinations. The MFM-GOST2 and twelve generally used topographic correction methods were evaluated via a case study by visual analysis, linear relationship analysis, and the rose diagram analysis. The result showed that the MFM-GOST2 method successfully removed most of the topographic effects of a subset image of the Landsat-8 image in a case study. The case study also illustrates that the rose diagram analysis is a good way to evaluate topographic corrections, but the linear relationship analysis cannot be used independently for the evaluations because the decorrelation is not a sufficient condition to determine a successful topographic correction.
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Abstract
Rugged terrain distorts optical remote sensing signals, and land-cover classification and biophysical parameter retrieval over mountainous regions must account for topographic effects. Therefore, topographic correction is a prerequisite for many remote sensing applications. In this study, we proposed a semi-physically based and simple topographic correction method for vegetation canopies based on path length correction (PLC). The PLC method was derived from the solution to the classic radiative transfer equation, and the influence of terrain on the radiative transfer process within the canopy is explicitly considered, making PLC physically sound. The radiative transfer equation was simplified to make PLC mathematically simple. Near-nadir observations derived from a Landsat 8 Operational Land Imager (OLI) image covering a mountainous region and wide field-of-view observations derived from simulation using a canopy reflectance model were combined to test the PLC correction method. Multi-criteria were used to provide objective evaluation results. The performances were compared to that of five other methods: CC, SCS + C, and SE, which are empirical parameter-based methods, and SCS and DS, which are semi-physical methods without empirical parameter. All the six methods could significantly reduce the topographic effects. However, SCS showed obvious overcorrection for near-nadir observations. The correction results from D-S showed an obvious positive bias. For near-nadir observations, the performance of PLC was comparable to the well-validated parameter-based methods. For wide field-of-view observations, PLC obviously outperformed all other methods. Because of the physical soundness and mathematical simplicity, PLC provides an efficient approach to correct the terrain-induced canopy BRDF distortion and will facilitate the exploitation of multi-angular information for biophysical parameter retrieval over mountainous regions.
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Ned Ruby

Ned Ruby

Visiting Scientist

Grischa Chen

Grischa Chen

Scientific Lab Manager

Lisa Rouressol

Lisa Rouressol

Graduate Student

Abstract
Energy-harvesting-powered sensors are increasingly deployed beyond the reach of terrestrial gateways, where there is often no persistent power supply. Making use of the internet of drones (IoD) for data aggregation in such environments is a promising paradigm to enhance network scalability and connectivity. The flexibility of IoD and favorable line-of-sight connections between the drones and ground nodes are exploited to improve data reception at the drones. In this article, we discuss the challenges of online flight control of IoD, where data-driven neural networks can be tailored to design the trajectories and patrol speeds of the drones and their communication schedules, preventing buffer overflows at the ground nodes. In a small-scale IoD, a multi-agent deep reinforcement learning can be developed with long short-term memory to train the continuous flight control of IoD and data aggregation scheduling, where a joint action is generated for IoD via sharing the flight control decisions among the drones. In a large-scale IoD, sharing the flight cont rol decisions in real-time can result in communication overheads and interference. In this case, deep reinforcement learning can be trained with the second-hand visiting experiences, where the drones learn the actions of each other based on historical scheduling records maintained at the ground nodes.
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Abstract
Apollo is a genome annotation-editing tool with an easy to use graphical interface. It is a component of the GMOD project, with ongoing development driven by the community. Recent additions to the software include support for the generic feature format version 3 (GFF3), continuous transcriptome data, a full Chado database interface, integration with remote services for on-the-fly BLAST and Primer BLAST analyses, graphical interfaces for configuring user preferences and full undo of all edit operations. Apollo's user community continues to grow, including its use as an educational tool for college and high-school students.
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Abstract
We present the discovery and validation of a three-planet system orbiting the nearby (31.1 pc) M2 dwarf star TOI-700 (TIC 150428135).TOI-700lies in the TESS continuous viewing zone in the Southern Ecliptic Hemisphere; observations spanning 11 sectors reveal three planets with radii ranging from 1 R(circle plus)to 2.6 R(circle plus)and orbital periods ranging from 9.98 to 37.43 days. Ground-based follow-up combined with diagnostic vetting and validation tests enables us to rule out common astrophysical false-positive scenarios and validate the system of planets. The outermost planet, TOI-700 d, has a radius of 1.19 0.11R(circle plus)and resides within a conservative estimate of the host star's habitable zone, where it receives a flux from its star that is approximately 86% of Earth's insolation. In contrast to some other low-mass stars that host Earth-sized planets in their habitable zones, TOI-700 exhibits low levels of stellar activity, presenting a valuable opportunity to study potentially rocky planets over a wide range of conditions affecting atmospheric escape. While atmospheric characterization of TOI-700 d with the James Webb Space Telescope (JWST) will be challenging, the larger sub-Neptune, TOI-700 c (R = 2.63R(circle plus)), will be an excellent target for JWST and future space-based observatories. TESS is scheduled to once again observe the Southern Hemisphere, and it will monitor TOI-700 for an additional 11 sectors in its extended mission. These observations should allow further constraints on the known planet parameters and searches for additional planets and transit timing variations in the system.
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Abstract
Acylsugars are a class of plant defense compounds produced across many distantly related families. Members of the horticulturally important morning glory (Convolvulaceae) family produce a diverse subclass of acylsugars called resin glycosides (RGs), which comprise oligosaccharide cores, hydroxyacyl chain(s), and decorating aliphatic and aromatic acyl chains. While many RG structures are characterized, the extent of structural diversity of this class in different genera and species is not known. In this study, we asked whether there has been lineage-specific diversification of RG structures in different Convolvulaceae species that may suggest diversification of the underlying biosynthetic pathways. Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) was performed from root and leaf extracts of 26 species sampled in a phylogeny-guided manner. LC-MS/MS revealed thousands of peaks with signature RG fragmentation patterns with one species producing over 300 signals, mirroring the diversity in Solanaceae-type acylsugars. A novel RG from Dichondra argentea was characterized using nuclear magnetic resonance spectroscopy, supporting previous observations of RGs with open hydroxyacyl chains instead of closed macrolactone ring structures. Substantial lineagespecific differentiation in utilization of sugars, hydroxyacyl chains, and decorating acyl chains was discovered, especially among Ipomoea and Convolvulus-the two largest genera in Convolvulaceae. Adopting a computational, knowledge-based strategy, we further developed a high-recall workflow that successfully explained similar to 72% of the MS/MS fragments, predicted the structural components of 11/13 previously characterized RGs, and partially annotated similar to 45% of the RGs. Overall, this study improves our understanding of phytochemical diversity and lays a foundation for characterizing the evolutionary mechanisms underlying RG diversification.
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Abstract
Soil salinity is a growing problem in world production agriculture. Continued improvement in crop salt tolerance will require the implementation of innovative breeding strategies such as marker-assisted selection (MAS) and genomic selection (GS). Genetic analyses for yield and vigor traits under salt stress in alfalfa breeding populations with three different phenotypic datasets was assessed. Genotype-by-sequencing (GBS) developed markers with allele dosage and phenotypic data were analyzed by genome-wide association studies (GWAS) and GS using different models. GWAS identified 27 single nucleotide polymorphism (SNP) markers associated with salt tolerance. Mapping SNPs markers against the Medicago truncatula reference genome revealed several putative candidate genes based on their roles in response to salt stress. Additionally, eight GS models were used to estimate breeding values of the training population under salt stress. Highest prediction accuracies and root mean square errors were used to determine the best prediction model. The machine learning methods (support vector machine and random forest) performance best with the prediction accuracy of 0.793 for yield. The marker loci and candidate genes identified, along with optimized GS prediction models, were shown to be useful in improvement of alfalfa with enhanced salt tolerance. DNA markers and the outcome of the GS will be made available to the alfalfa breeding community in efforts to accelerate genetic gains, in the development of biotic stress tolerant and more productive modern-day alfalfa cultivars.
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