Stanford, CA — The Plant Metabolic Network (http://www.plantcyc.org/), which is based at Carnegie’s Department of Plant Biology, has launched four new online...
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Washington, D.C. — Plant science is key to addressing the major challenges facing humanity in the 21st Century, according to Carnegie’s David Ehrhardt and Wolf Frommer. In a Perspective published in...
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Stanford, CA—The major difference between plant and animal cells is the photosynthetic process, which converts light energy into chemical energy. When light isn’t available, energy is generated by...
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Stanford, CA— Along with photosynthesis, the plant cell wall is one of the features that most set plants apart from animals. A structural molecule called cellulose is necessary for the manufacture of...
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Stanford, CA— Plant's leaves are sealed with a gas-tight wax layer to prevent water loss. Plants breathe through microscopic pores called stomata (Greek for mouths) on the surfaces of leaves. Over 40...
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Stanford, CA— Plant roots are fascinating plant organs – they not only anchor the plant, but are also the world’s most efficient mining companies. Roots live in darkness and direct the activities of...
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  Stanford, CA – Scientists at Carnegie’s Department of Plant Biology have made the first real-time observations of sugars in the cells of intact and living plant tissues. With the help of...
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Revolutionary progress in understanding plant biology is being driven through advances in DNA sequencing technology. Carnegie plant scientists have played a key role in the sequencing and genome annotation efforts of the model plant Arabidopsis thaliana and the soil alga Chlamydomonas reinhardtii....
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Today, humanity is increasingly aware of the impact it has on the environment and the difficulties caused when the environment impacts our communities. Environmental change can be particularly harsh when the plants we use for food, fuel, feed and fiber are affected by this change. High salinity is...
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Fresh water constitutes less than 1% of the surface water on earth, yet the importance of this simple molecule to all life forms is immeasurable. Water represents the most vital reagent for chemical reactions occurring in a cell. In plants, water provides the structural support necessary for plant...
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Matthew Evans wants to provide new tools for plant scientists to engineer better seeds for human needs. He focuses on one of the two phases to their life cycle. In the first phase, the sporophyte is the diploid generation—that is with two similar sets of chromosomes--that undergoes meiosis to...
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One way to adapt to climate change is to understand how plants can thrive in the changing environment. José Dinneny looks at the mechanisms that control environmental responses in plants, including responses to salty soils and different moisture conditions—work that provides the foundation for...
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Steroids are important hormones in both animals and plants. They bulk up plants just as they do human athletes, but the pathway of molecular signals that tell the genes to boost growth and development is more complex in plant cells than in animal cells. Unlike animals, plants do not have glands to...
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Carnegie Plant Biology Acting Director Sue Rhee and staff scientist José Dinneny and their labs are part of a research effort led by The Donald Danforth Plant Science Center, one of the world’s...
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Stanford, CA—The scientific community needs to make a 10-year, $100 billion investment in food and energy security, says Carnegie’s Wolf Frommer and Tom Brutnell of the Donald Danforth Plant Science...
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A plant's roots grow and spread into the soil, taking up necessary water and minerals. The tip of a plant's root is a place of active cell division followed by cell elongation, with different zones...
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Explore Carnegie Science

February 16, 2018

Stanford, CA—Roots face many challenges in the soil in order to supply the plant with the necessary water and nutrients.  New work from Carnegie and Stanford University’s José Dinneny shows that one of these challenges, salinity, can cause root cells to explode if the risk is not properly sensed. The findings, published by Current Biology, could help scientists improve agricultural productivity in saline soils, which occur across the globe and reduce crop yields.

Salts build up in soils from natural causes, such as sea spray, or can be introduced as a consequence of irrigation and poor land management. Salinity has deleterious effects on plant health and limits crop yields,

Carnegie Science, Carnegie Institution, Carnegie Institution for Science, Stanford University
January 9, 2018

Washington, DC— Without eyes, ears, or a central nervous system, plants can perceive the direction of environmental cues and respond to ensure their survival.

For example, roots need to extend through the maze of nooks and crannies in the soil toward sources of water and nutrients. The various ways that plants guide this branching to take advantage of their environment is of great interest to scientists and of potential use by farmers in need of crops that produce more food with fewer resources.

Carnegie and Stanford University biologist José Dinneny has spent years studying how root growth responds to water, particularly through a phenomenon called hydropatterning, which

October 4, 2017

Science News magazine has selected José Dinneny, of Carnegie’s Department of Plant Biology, as one of ten young scientists to watch in 2017. The researchers were selected because they are likely to make big discoveries. The investigators are spotlighted in the October 14 edition of Science News available online today at www.sciencenews.org/SN10.

Dinneny looks at the mechanisms plants use to sense water availability and survive stressful conditions such as drought and high salinity. He investigates developmental pathways and molecular genetic mechanisms involved in shaping the plant to suit the environment. His work has included the processes of water-stress responses in plants at

Carnegie Science, Carnegie Institution, Carnegie Institution for Science, Donald Danforth Plant Science Center
October 2, 2017

Stanford, CA— Carnegie Plant Biology Acting Director Sue Rhee and staff scientist José Dinneny and their labs are part of a research effort led by The Donald Danforth Plant Science Center, one of the world’s largest independent plant science institutes, which today announced a 5-year, $16 million grant from the U.S. Department of Energy.

Building on earlier research using the often-studied model grass called green foxtail (Setaria viridis), this project will identify new genes and pathways that contribute to photosynthesis and enhanced water-use efficiency. The team will then deploy these genes using tools from the emerging field of synthetic biology to accelerate development of

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Today, humanity is increasingly aware of the impact it has on the environment and the difficulties caused when the environment impacts our communities. Environmental change can be particularly harsh when the plants we use for food, fuel, feed and fiber are affected by this change. High salinity is an agricultural contaminant of increasing significance. Not only does this limit the land available for use in agriculture, but in land that has been used for generations, the combination of irrigation and evaporation gradually leads to increasing soil salinity.

The Dinneny lab focuses on understanding how developmental processes such as cell-type specification regulate responses to

Fresh water constitutes less than 1% of the surface water on earth, yet the importance of this simple molecule to all life forms is immeasurable. Water represents the most vital reagent for chemical reactions occurring in a cell. In plants, water provides the structural support necessary for plant growth. It acts as the carrier for nutrients absorbed from the soil and transported to the shoot. It also provides the chemical components necessary to generate sugar and biomass from light and carbon dioxide during photosynthesis. While the importance of water to plants is clear, an understanding as to how plants perceive water is limited. Most studies have focused on environmental conditions

Carnegie researchers recently constructed genetically encoded FRET sensors for a variety of important molecules such as glucose and glutamate. The centerpiece of these sensors is a recognition element derived from the superfamily of bacterial binding protiens called periplasmic binding protein (PBPs), proteins that are primary receptors for moving chemicals  for hundreds of different small molecules. PBPs are ideally suited for sensor construction. The scientists fusie individual PBPs with a pair of variants and produced a large set of sensors, e.g. for sugars like maltose, ribose and glucose or for the neurotransmitter glutamate. These sensors have been adopted for measurement of sugar

Revolutionary progress in understanding plant biology is being driven through advances in DNA sequencing technology. Carnegie plant scientists have played a key role in the sequencing and genome annotation efforts of the model plant Arabidopsis thaliana and the soil alga Chlamydomonas reinhardtii. Now that many genomes from algae to mosses and trees are publicly available, this information can be mined using bioinformatics to build models to understand gene function and ultimately for designing plants for a wide spectrum of applications.

 Carnegie researchers have pioneered a genome-wide gene association network Aranet that can assign functions to genes for which no function had

Understanding how plants grow can lead to improving crops.  Plant scientist Kathryn Barton, who joined Carnegie in 2001, investigates just that: what controls the plant’s body plan, from  the time it’s an embryo to its adult leaves. These processes include how plant parts form different orientations, from top to bottom, and different poles. She looks at regulation by small RNA’s, the function of small so-called Zipper proteins, and how hormone biosynthesis and response controls the plant’s growth.

Despite an enormous variety in leaf shape and arrangement, the basic body plan of plants is about the same: stems and leaves alternate in repeating units. The structure responsible for

Steroids are important hormones in both animals and plants. They bulk up plants just as they do human athletes, but the pathway of molecular signals that tell the genes to boost growth and development is more complex in plant cells than in animal cells. Unlike animals, plants do not have glands to produce and secrete hormones. Rather, each plant cell has the ability to generate hormones. Another difference is that animal cells typically have receptor molecules that respond to select steroids located within a cell's nucleus. In plants, steroid receptors are anchored to the outside surface of a cell’s outer membrane—the membrane that delineates a cell as a single unit.

Zhiyong Wang

Devaki Bhaya wants to understand how environmental stressors, such as light, nutrients, and viral attacks are sensed by and affect photosynthetic microorganisms. She is also interested in understanding the mechanisms behind microorganism movements, and how individuals in groups communicate, evolve, share resources. To these ends, she focuses on one-celled, aquatic cyanobacteria, in the lab with model organisms and with organisms in naturally occurring communities.

 Phototaxis is the ability of organisms to move directionally in response to a light source.  Many cyanobacteria exhibit phototaxis, both towards and away from light. The ability to move into optimal light for

Plants are essential to life on Earth and provide us with food, fuel, clothing, and shelter.  Despite all this, we know very little about how they do what they do. Even for the best-studied species, such as Arabidopsis thaliana --a wild mustard studied in the lab--we know about less than 20% of what its genes do and how or why they do it. And understanding this evolution can help develop new crop strains to adapt to climate change.  

Sue Rhee wants to uncover the molecular mechanisms underlying adaptive traits in plants to understand how these traits evolved. A bottleneck has been the limited understanding of the functions of most plant genes. Rhee’s group is building genome-wide